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ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit
The ERCC3 gene encodes the XPB protein, a key component of the TFIIH complex involved in gene transcription and essential DNA repair processes. ERCC3 plays a vital role in maintaining genomic integrity by participating in nucleotide excision repair (NER), a critical mechanism for fixing damaged DNA.
ERCC3 is located on the long (q) arm of chromosome 2, at band 2q14.3. Arm ratio per GRCh38 - banding schematic.
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Overview
The ERCC3 gene, also known as XPB, provides instructions for producing a protein that is an integral subunit of the general transcription factor IIH (TFIIH) complex. This complex has two main functions: regulating gene transcription and repairing damaged DNA. By contributing to these processes, ERCC3 is crucial for normal cellular function and protection against DNA damage from environmental factors.
What the gene does
The XPB protein, encoded by ERCC3, is an essential part of the TFIIH complex, which is involved in two critical cellular activities. Firstly, it participates in gene transcription, the initial step in protein production, thereby helping to regulate the activity of many genes. Secondly, the TFIIH complex, with the help of XPB, plays a significant role in DNA repair, particularly through the nucleotide excision repair (NER) pathway. In NER, the TFIIH complex unwinds sections of double-stranded DNA surrounding damage, with XPB thought to act as a wedge to hold the DNA strands apart, allowing other proteins to remove and replace the damaged segment.
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Chromosome location
The ERCC3 gene is located on chromosome 2 at position 2q14.3. This region of the human genome contains the genetic instructions for the ERCC3 protein, which comprises 782 amino acids.
Protein structure
The ERCC3 protein exhibits a complex domain architecture essential for its function. An N-terminal disordered region spans amino acids 1-51, followed by a nuclear localization signal motif from amino acids 6-18. Another disordered region is found between amino acids 218-241. Key functional components include the Helicase ATP-binding domain (amino acids 327-488) and the Helicase C-terminal domain (amino acids 542-702), which are crucial for its helicase activity. Within the ATP-binding domain, a DEVH box motif is located from amino acids 441-444.
Key variants
Variants within the ERCC3 gene can impact the function of the XPB protein, potentially affecting its role in DNA repair and gene transcription. These genetic changes can lead to altered protein activity, contributing to various inherited conditions.
Sample of pathogenic variants
10 pathogenic / likely-pathogenic variants from ClinVar, ranked by review status (expert-panel-reviewed first). This is a sample; recurrent founder variants in a specific population may not appear here - see the full ClinVar listing via the link above.
| Variant (HGVS) | Protein change | Classification | Evidence | Associated condition |
|---|---|---|---|---|
c.1115_1120dup | p.Trp374Ter | Pathogenic/Likely pathogenic | ★★☆☆ | Trichothiodystrophy 2, photosensitive |
c.1162C>T | p.Gln388Ter | Pathogenic/Likely pathogenic | ★★☆☆ | Trichothiodystrophy 2, photosensitive |
c.1300G>T | p.Glu434Ter | Pathogenic/Likely pathogenic | ★★☆☆ | Xeroderma pigmentosum group B |
c.1354C>T | p.Arg452Ter | Pathogenic/Likely pathogenic | ★★☆☆ | Xeroderma pigmentosum group B |
c.1588C>T | p.Arg530Ter | Pathogenic/Likely pathogenic | ★★☆☆ | Trichothiodystrophy 2, photosensitive |
c.1720C>T | p.Arg574Ter | Pathogenic/Likely pathogenic | ★★☆☆ | Trichothiodystrophy 2, photosensitive |
c.1735del | p.Tyr579fs | Pathogenic/Likely pathogenic | ★★☆☆ | not provided |
c.1757del | p.Gln586fs | Pathogenic/Likely pathogenic | ★★☆☆ | Inborn genetic diseases |
c.2131C>T | p.Gln711Ter | Pathogenic/Likely pathogenic | ★★☆☆ | Inborn genetic diseases |
c.760C>T | p.Gln254Ter | Pathogenic | ★★☆☆ | Xeroderma pigmentosum group B |
Evidence stars indicate ClinVar review status. Individual variant interpretation should always be performed by a qualified clinical laboratory - many variants remain classified as Variants of Uncertain Significance (VUS) pending more research.
Associated conditions
Variants in the ERCC3 gene are associated with conditions primarily characterised by defective DNA repair. These include trichothiodystrophy, which affects multiple body systems and causes brittle hair, and xeroderma pigmentosum, characterised by extreme sensitivity to ultraviolet light and increased skin cancer risk. Some individuals may present with features of both conditions, known as xeroderma pigmentosum/Cockayne syndrome (XP/CS) complex.
No disease links recorded for this gene in our reference set.
Inheritance pattern
Conditions caused by pathogenic ERCC3 variants typically follow autosomal recessive inheritance.
When both parents are carriers, each child has a 25% chance of being affected, 50% of being a carrier, and 25% of being unaffected.
UK clinical status
ERCC3 is included in several UK NHS national genomic testing panels. It is part of the 'Adult solid tumours cancer susceptibility', 'Childhood solid tumours cancer susceptibility', and 'Childhood solid tumours' panels. The gene is also relevant for 'Bilateral congenital or childhood onset cataracts (R31)', 'DDG2P', 'Foetal anomalies (R21)', 'Intellectual disability', and 'Xeroderma pigmentosum, Trichothiodystrophy or Cockayne syndrome (R227)' panels, indicating its recognised clinical significance within the NHS.
Sources: NHS GMS PanelApp · Genomics England PanelApp · NHS National Genomic Test Directory
Frequently asked questions
What is the main role of the ERCC3 gene?
The ERCC3 gene provides instructions for the XPB protein, which is a vital part of the TFIIH complex. This complex is crucial for both initiating gene transcription and carrying out nucleotide excision repair (NER) of damaged DNA.
Which conditions are associated with ERCC3 gene variants?
Variants in the ERCC3 gene are linked to conditions such as trichothiodystrophy, characterised by brittle hair and other symptoms, and xeroderma pigmentosum, which involves extreme sensitivity to UV light and an increased risk of skin cancer. Some individuals may present with features of both conditions, known as xeroderma pigmentosum/Cockayne syndrome complex.
How does ERCC3 contribute to DNA repair?
The ERCC3 gene's protein, XPB, is part of the TFIIH complex that participates in nucleotide excision repair (NER). This complex helps unwind the damaged section of DNA, allowing XPB to hold the strands open while other proteins remove and replace the faulty segment, thus maintaining genomic stability.
References
- Oksenych V, Coin F. The long unwinding road: XPB and XPD helicases in damaged DNA opening. Cell cycle (Georgetown, Tex.). 2010. PMID: 20016270
- Lambert WC, Gagna CE, Lambert MW. Xeroderma pigmentosum: its overlap with trichothiodystrophy, Cockayne syndrome and other progeroid syndromes. Advances in experimental medicine and biology. 2008. PMID: 19181118
- Coin F, Oksenych V, Egly JM. Distinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repair. Molecular cell. 2007. PMID: 17466626
- Oh KS, Imoto K, Boyle J. Influence of XPB helicase on recruitment and redistribution of nucleotide excision repair proteins at sites of UV-induced DNA damage. DNA repair. 2007. PMID: 17509950
- Oh KS, Khan SG, Jaspers NG. Phenotypic heterogeneity in the XPB DNA helicase gene (ERCC3): xeroderma pigmentosum without and with Cockayne syndrome. Human mutation. 2006. PMID: 16947863
- Riou L, Zeng L, Chevallier-Lagente O. The relative expression of mutated XPB genes results in xeroderma pigmentosum/Cockayne's syndrome or trichothiodystrophy cellular phenotypes. Human molecular genetics. 1999. PMID: 10332046
- Weeda G, Eveno E, Donker I. A mutation in the XPB/ERCC3 DNA repair transcription gene, associated with trichothiodystrophy. American journal of human genetics. 1997. PMID: 9012405
- Weeda G, van Ham RC, Vermeulen W. A presumed DNA helicase encoded by ERCC-3 is involved in the human repair disorders xeroderma pigmentosum and Cockayne's syndrome. Cell. 1990. PMID: 2167179